SRX119737
GSM873694: e1a H3K4me1 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90
cell type
contact-inhibited IMR90
passages
6 to 10
infection
dl1500
chip antibody
anti-histone H3
chip antibody catalog number
ab8895
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM873694: e1a H3K4me1 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
168352075
Reads aligned (%)
57.3
Duplicates removed (%)
7.0
Number of peaks
167253 (qval < 1E-05)

hg19

Number of total reads
168352075
Reads aligned (%)
57.2
Duplicates removed (%)
7.2
Number of peaks
166737 (qval < 1E-05)

Base call quality data from DBCLS SRA