Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
input
strain
C57BL/6
tissue type
liver
chip antibody
none
chiip antibody manufacturer
none
chip antibody catalog number
none
chip antibody lot/batch
none

Sequenced DNA Library

library_name
GSM874972: INPUT_ZT06
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
30876978
Reads aligned (%)
99.3
Duplicates removed (%)
11.3
Number of peaks
495 (qval < 1E-05)

mm9

Number of total reads
30876978
Reads aligned (%)
99.2
Duplicates removed (%)
11.4
Number of peaks
454 (qval < 1E-05)

Base call quality data from DBCLS SRA