SRX119636
GSM874636: PAF1C 12h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAF1

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cells
cell line
A549
infected with
Flag-NS1 virus
time post infection
12h
antibody
anti-hPAF1
antibody vendor
Bethyl laboratories
molecule type
crosslinked-DNA

Sequenced DNA Library

library_name
GSM874636: PAF1C 12h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
116599531
Reads aligned (%)
84.3
Duplicates removed (%)
9.7
Number of peaks
2475 (qval < 1E-05)

hg19

Number of total reads
116599531
Reads aligned (%)
83.8
Duplicates removed (%)
10.7
Number of peaks
2219 (qval < 1E-05)

Base call quality data from DBCLS SRA