SRX119631
GSM874631: K4me3 0h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cells
cell line
A549
infected with
none (uninfected)
time post infection
0h
antibody
anti-H3K4me3
antibody vendor
Millipore
molecule type
crosslinked-DNA

Sequenced DNA Library

library_name
GSM874631: K4me3 0h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38440266
Reads aligned (%)
84.4
Duplicates removed (%)
5.5
Number of peaks
27343 (qval < 1E-05)

hg19

Number of total reads
38440266
Reads aligned (%)
83.9
Duplicates removed (%)
6.3
Number of peaks
27621 (qval < 1E-05)

Base call quality data from DBCLS SRA