SRX119598
GSM873984: ChIP-seq IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 differentiated TNF
cell line
3T3-L1
treatment
differentiated TNF
passage
less than 10
antibody
IgG
vendor/catalog/lot
sc-2027, lot number C0411

Sequenced DNA Library

library_name
GSM873984: ChIP-seq IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39450079
Reads aligned (%)
77.8
Duplicates removed (%)
69.9
Number of peaks
385 (qval < 1E-05)

mm9

Number of total reads
39450079
Reads aligned (%)
77.7
Duplicates removed (%)
70.1
Number of peaks
626 (qval < 1E-05)

Base call quality data from DBCLS SRA