Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Blood
Cell type
G1ME
NA
NA

Attributes by original data submitter

Sample

source_name
G1ME cells
strain
J1
cell type
G1ME
cell line
GATA1-deficient cell line with megakaryocyte and erythrocyte differentiation potential
protocol
Cells grown in TPO supernatant (10% v/v)
retrovirus
MigR1-HA-Gata1(V205G)
antibody
HA-tag antibody (Santa Crruz Biotechnology, sc-7392)
fraction
ChIP

Sequenced DNA Library

library_name
GSM872894: V205G ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
57583392
Reads aligned (%)
84.8
Duplicates removed (%)
49.1
Number of peaks
5278 (qval < 1E-05)

mm9

Number of total reads
57583392
Reads aligned (%)
84.6
Duplicates removed (%)
49.1
Number of peaks
5304 (qval < 1E-05)

Base call quality data from DBCLS SRA