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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: G1ME
ATCC
MeSH
RIKEN BRC
SRX119325
GSM872894: V205G ChIP-Seq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Blood
Cell type
G1ME
NA
NA
Attributes by original data submitter
Sample
source_name
G1ME cells
strain
J1
cell type
G1ME
cell line
GATA1-deficient cell line with megakaryocyte and erythrocyte differentiation potential
protocol
Cells grown in TPO supernatant (10% v/v)
retrovirus
MigR1-HA-Gata1(V205G)
antibody
HA-tag antibody (Santa Crruz Biotechnology, sc-7392)
fraction
ChIP
Sequenced DNA Library
library_name
GSM872894: V205G ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
57583392
Reads aligned (%)
84.8
Duplicates removed (%)
49.1
Number of peaks
5278 (qval < 1E-05)
mm9
Number of total reads
57583392
Reads aligned (%)
84.6
Duplicates removed (%)
49.1
Number of peaks
5304 (qval < 1E-05)
Base call quality data from
DBCLS SRA