ChIP-Atlas: SRX119302

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Embryo
Cell type: 0-8h embryos
NA: NA

Attributes by original data submitter

Sample

source_name: embryo
developmental stage: embryo 0-8h
fraction: ChIP
custom antibody: BEAF [Bushey AM, Ramos E, Corces VG. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 2009 Jun 1;23(11):1338-50. PMID: 19443682]

Sequenced DNA Library

library_name: GSM872904: BEAF ChIP in Drosophila melanogaster
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads: 22513168
Reads aligned (%): 93.3
Duplicates removed (%): 55.8
Number of peaks: 8657 (qval < 1E-05)

dm3

Number of total reads: 22513168
Reads aligned (%): 93.6
Duplicates removed (%): 53.7
Number of peaks: 8490 (qval < 1E-05)

Base call quality data from DBCLS SRA