Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
Input DNA with Kinetic Enrichment_testis_SSDS
strain
B10.F-H2pb1/(13R)J X B11.S-H2t4/(9R)/J
genotype/variation
wild type
tissue
testis
sequencing technique
Single Stranded DNA Sequencing (SSDS)

Sequenced DNA Library

library_name
GSM869789: Input DNA with Kinetic Enrichment
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
170338410
Reads aligned (%)
23.9
Duplicates removed (%)
22.7
Number of peaks
186 (qval < 1E-05)

mm9

Number of total reads
170338410
Reads aligned (%)
23.9
Duplicates removed (%)
22.8
Number of peaks
209 (qval < 1E-05)

Base call quality data from DBCLS SRA