Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2.2.15 cells, H3K4me3 ChIP
cell line
HepG2.2.15
cell type
human hepatocellular liver carcinoma cells
chip antibody
anti-H3K4me3
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM868999: HepG2.2.15.H3K4me3_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
25183510
Reads aligned (%)
98.1
Duplicates removed (%)
13.0
Number of peaks
41372 (qval < 1E-05)

hg19

Number of total reads
25183510
Reads aligned (%)
97.9
Duplicates removed (%)
13.2
Number of peaks
42232 (qval < 1E-05)

Base call quality data from DBCLS SRA