Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ces-1

Cell type

Cell type Class
Larvae
Cell type
L3
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_CES1_GFP_L3_rep2
strain
OP174(official name : OP174 genotype : unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG; unc-119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CES-1::EGFP fusion protein is expressed in the correct ces-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CES-1 transcription factor. made_by : S. Kim )
developmental stage
L3
genotype
unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM864858: Snyder_CES1_GFP_L3_rep2 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
11242035
Reads aligned (%)
13.5
Duplicates removed (%)
6.0
Number of peaks
263 (qval < 1E-05)

ce10

Number of total reads
11242035
Reads aligned (%)
13.5
Duplicates removed (%)
6.0
Number of peaks
266 (qval < 1E-05)

Base call quality data from DBCLS SRA