ChIP-Atlas: SRX118013

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: NCOR1

Cell type

Cell type Class: Kidney
Cell type: 293
Primary Tissue: Kidney
Tissue Diagnosis: Normal

Attributes by original data submitter

Sample

source_name: 293T cells
cell type: 293T
antibody: anti-N-CoR

Sequenced DNA Library

library_name: GSM865745: NCOR ChIP-seq (siGPS2)
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 60163898
Reads aligned (%): 20.0
Duplicates removed (%): 19.4
Number of peaks: 1190 (qval < 1E-05)

hg19

Number of total reads: 60163898
Reads aligned (%): 19.9
Duplicates removed (%): 19.9
Number of peaks: 1216 (qval < 1E-05)

Base call quality data from DBCLS SRA