SRX118001
GSM867156: GATA1 ESEP Proliferating Rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived haematopoietic progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
ES-cell derived erythroid progenitors
chip antibody
polyclonal rabbit a-GATA-1 produced in-house (H Im et al. PNAS 2005)
growth condition
Proliferating
cell type
ES-cell derived erythroid progenitors
cell line
ES-EP

Sequenced DNA Library

library_name
GSM867156: GATA1 ESEP Proliferating Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5826839
Reads aligned (%)
94.4
Duplicates removed (%)
9.2
Number of peaks
2160 (qval < 1E-05)

mm9

Number of total reads
5826839
Reads aligned (%)
94.2
Duplicates removed (%)
9.7
Number of peaks
2160 (qval < 1E-05)

Base call quality data from DBCLS SRA