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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: mESC derived cardiac cells
ATCC
MeSH
RIKEN BRC
SRX117955
GSM866994: FACS-sorted eGFP+ CPCs input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived cardiac cells
NA
NA
Attributes by original data submitter
Sample
source_name
Cardiac progenitor cells, input
strain
C57BL/6
cell type
ES-derived cardiac progenitor cells (CPCs)
differentiation time
day 6 of EB differentiation
chip antibody
none
Sequenced DNA Library
library_name
GSM866994: FACS-sorted eGFP+ CPCs input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
33501268
Reads aligned (%)
13.9
Duplicates removed (%)
55.5
Number of peaks
1356 (qval < 1E-05)
mm9
Number of total reads
33501268
Reads aligned (%)
13.9
Duplicates removed (%)
55.9
Number of peaks
1380 (qval < 1E-05)
Base call quality data from
DBCLS SRA