SRX1178449
GSM1866648: ChIP seq ChaF1a 2122 day3 H3K9me3 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC intermediates
NA
NA

Attributes by original data submitter

Sample

source_name
OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts
strain
Black6-129X1/SvJ
tissue
Mouse Embryonic Fibroblasts
age
E13.5 embryos
antibody
none
genotype
Col1a1::tetOP-OKSM ; R26-M2rtTA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
see methods section in main text Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21981699
Reads aligned (%)
98.5
Duplicates removed (%)
12.1
Number of peaks
365 (qval < 1E-05)

mm9

Number of total reads
21981699
Reads aligned (%)
98.3
Duplicates removed (%)
12.1
Number of peaks
393 (qval < 1E-05)

Base call quality data from DBCLS SRA