SRX117840
GSM866352: shluc.Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Input control
cell line
K562
shRNA construct
luciferase (shluc)
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM866352: shluc.Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
148165330
Reads aligned (%)
94.4
Duplicates removed (%)
74.6
Number of peaks
1445 (qval < 1E-05)

hg19

Number of total reads
148165330
Reads aligned (%)
93.4
Duplicates removed (%)
76.1
Number of peaks
784 (qval < 1E-05)

Base call quality data from DBCLS SRA