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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: OVOL2
wikigenes
PDBj
CellType: HCE-T
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1178183
GSM1867063: HCE-T-OVOL2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
OVOL2
Cell type
Cell type Class
Others
Cell type
HCE-T
Primary Tissue
Eye
Tissue Diagnosis
Mormal
Attributes by original data submitter
Sample
source_name
CEC cell line, HCE-T
cell line
HCE-T
cell type
corneal epithelium cell (CEC) line
chip antibody
OVOL2
chip antibody vendor
SantaCruz Biotech
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10 ng of immunoprecipitated DNA was ligated with adaptors of Illumina GAIIx using illumina TruSeq ChIP Sample Prep Kit (illumina).
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
12393040
Reads aligned (%)
2.1
Duplicates removed (%)
96.7
Number of peaks
46 (qval < 1E-05)
hg38
Number of total reads
12393040
Reads aligned (%)
2.8
Duplicates removed (%)
95.6
Number of peaks
35 (qval < 1E-05)
Base call quality data from
DBCLS SRA