SRX1178183
GSM1867063: HCE-T-OVOL2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
OVOL2

Cell type

Cell type Class
Others
Cell type
HCE-T
Primary Tissue
Eye
Tissue Diagnosis
Mormal

Attributes by original data submitter

Sample

source_name
CEC cell line, HCE-T
cell line
HCE-T
cell type
corneal epithelium cell (CEC) line
chip antibody
OVOL2
chip antibody vendor
SantaCruz Biotech

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10 ng of immunoprecipitated DNA was ligated with adaptors of Illumina GAIIx using illumina TruSeq ChIP Sample Prep Kit (illumina).

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
12393040
Reads aligned (%)
2.1
Duplicates removed (%)
96.7
Number of peaks
46 (qval < 1E-05)

hg38

Number of total reads
12393040
Reads aligned (%)
2.8
Duplicates removed (%)
95.6
Number of peaks
35 (qval < 1E-05)

Base call quality data from DBCLS SRA