SRX117815
GSM866204: Input Vezf1 ko; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mm9ES_Vezf1 ko_Input
genotype/variation
Vezf1-/-
cell type
embryonic stem (ES) cells

Sequenced DNA Library

library_name
GSM866204: Input Vezf1 ko
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22207125
Reads aligned (%)
75.6
Duplicates removed (%)
7.6
Number of peaks
649 (qval < 1E-05)

mm9

Number of total reads
22207125
Reads aligned (%)
75.4
Duplicates removed (%)
7.7
Number of peaks
726 (qval < 1E-05)

Base call quality data from DBCLS SRA