SRX1177018
GSM1865706: ChIP-seq - mES - γ-H2AX - 12hr KD, 7SK ASO rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells
cell type
ES cells
cell line
v6.5
gender
male
antibody
Abcam, Cat# ab11174

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were produced from soncated cell material and transcription factor associated DNA was enriched with specific antibodies. Libraries were prepared according to NEBNext kit.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51213791
Reads aligned (%)
96.3
Duplicates removed (%)
14.9
Number of peaks
753 (qval < 1E-05)

mm9

Number of total reads
51213791
Reads aligned (%)
96.1
Duplicates removed (%)
14.9
Number of peaks
770 (qval < 1E-05)

Base call quality data from DBCLS SRA