Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells
cell type
ES cells
cell line
v6.5
gender
male
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were produced from soncated cell material and transcription factor associated DNA was enriched with specific antibodies. Libraries were prepared according to NEBNext kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
52304842
Reads aligned (%)
97.9
Duplicates removed (%)
14.0
Number of peaks
370 (qval < 1E-05)

mm9

Number of total reads
52304842
Reads aligned (%)
97.7
Duplicates removed (%)
14.0
Number of peaks
420 (qval < 1E-05)

Base call quality data from DBCLS SRA