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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Stat5a
wikigenes
PDBj
CellType: CD8+ T cells
ATCC
MeSH
RIKEN BRC
SRX1176004
GSM1865310: 2 2480UCon IL2 STAT5 i81; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Stat5a
Cell type
Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD8 T cell
cell type
effector CD8 T cell
strain
C57BL/6
treatment
0.5 ug/ml IL-2 for 1 hour
antibody
anti-STAT5/R & D Systems, #PA-ST5A, lot #RU07
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Treated cells were snap frozen and shipped to ActiveMotif, Inc. who performed the STAT5A ChIP-seq analysis according to their FactorPath™ assay.
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34437376
Reads aligned (%)
84.9
Duplicates removed (%)
30.8
Number of peaks
2954 (qval < 1E-05)
mm9
Number of total reads
34437376
Reads aligned (%)
84.7
Duplicates removed (%)
30.8
Number of peaks
2971 (qval < 1E-05)
Base call quality data from
DBCLS SRA