SRX117469
GSM865284: K562 IgG; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chronic myeloid leukaemia
cell line
Human erythromyeloblastoid leukemia cell line K562
cell type
Cultured cancer cell line
cell cycle stage
All
chip antibody
IgG (Santa Cruz, Lot# C2210, cat# SC-2027)

Sequenced DNA Library

library_name
GSM865284: K562_IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28796356
Reads aligned (%)
97.2
Duplicates removed (%)
54.3
Number of peaks
137 (qval < 1E-05)

hg19

Number of total reads
28796356
Reads aligned (%)
96.9
Duplicates removed (%)
55.0
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA