SRX117467
GSM865282: K562 G2 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chronic myeloid leukaemia
cell line
Human erythromyeloblastoid leukemia cell line K562
cell type
Cultured cancer cell line
cell cycle stage
G2
chip antibody
H3K4me3 (Millipore, Lot# RF0807002, cat# CS20580)

Sequenced DNA Library

library_name
GSM865282: K562_G2_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11313152
Reads aligned (%)
78.9
Duplicates removed (%)
32.2
Number of peaks
26876 (qval < 1E-05)

hg19

Number of total reads
11313152
Reads aligned (%)
78.7
Duplicates removed (%)
32.3
Number of peaks
26745 (qval < 1E-05)

Base call quality data from DBCLS SRA