SRX117460
GSM865275: K562 S input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chronic myeloid leukaemia
cell line
Human erythromyeloblastoid leukemia cell line K562
cell type
Cultured cancer cell line
cell cycle stage
S
chip antibody
none (input control)

Sequenced DNA Library

library_name
GSM865275: K562_S_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20151496
Reads aligned (%)
99.2
Duplicates removed (%)
2.2
Number of peaks
372 (qval < 1E-05)

hg19

Number of total reads
20151496
Reads aligned (%)
98.6
Duplicates removed (%)
3.4
Number of peaks
625 (qval < 1E-05)

Base call quality data from DBCLS SRA