SRX117459
GSM865274: K562 G1 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chronic myeloid leukaemia
cell line
Human erythromyeloblastoid leukemia cell line K562
cell type
Cultured cancer cell line
cell cycle stage
G1
chip antibody
none (input control)

Sequenced DNA Library

library_name
GSM865274: K562_G1_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16118588
Reads aligned (%)
99.1
Duplicates removed (%)
2.4
Number of peaks
333 (qval < 1E-05)

hg19

Number of total reads
16118588
Reads aligned (%)
98.5
Duplicates removed (%)
3.7
Number of peaks
560 (qval < 1E-05)

Base call quality data from DBCLS SRA