Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer
cell line
LNCaP-abl
transfection
N/A
antibody
FOXA1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Library construction was performed using the ChIP-seq DNA sample Prep Kit (Illumina) according to the manufacture’s instruction.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
39723613
Reads aligned (%)
192.4
Duplicates removed (%)
2.6
Number of peaks
70998 (qval < 1E-05)

hg38

Number of total reads
39723613
Reads aligned (%)
193.9
Duplicates removed (%)
2.5
Number of peaks
71617 (qval < 1E-05)

Base call quality data from DBCLS SRA