Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-WCE
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
None

Sequenced DNA Library

library_name
GSM831044: H1_WCE_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
7681001
Reads aligned (%)
72.5
Duplicates removed (%)
1.4
Number of peaks
90 (qval < 1E-05)

hg19

Number of total reads
7681001
Reads aligned (%)
71.8
Duplicates removed (%)
1.6
Number of peaks
58 (qval < 1E-05)

Base call quality data from DBCLS SRA