SRX116471
GSM831043: H1 WCE 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-WCE
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
None

Sequenced DNA Library

library_name
GSM831043: H1_WCE_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10813095
Reads aligned (%)
97.9
Duplicates removed (%)
4.4
Number of peaks
296 (qval < 1E-05)

hg19

Number of total reads
10813095
Reads aligned (%)
97.6
Duplicates removed (%)
4.9
Number of peaks
426 (qval < 1E-05)

Base call quality data from DBCLS SRA