Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SIRT6

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-SIRT6 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Abcam,ab62739

Sequenced DNA Library

library_name
GSM831041: H1_SIRT6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
43772610
Reads aligned (%)
81.1
Duplicates removed (%)
7.8
Number of peaks
1098 (qval < 1E-05)

hg19

Number of total reads
43772610
Reads aligned (%)
80.4
Duplicates removed (%)
9.0
Number of peaks
1197 (qval < 1E-05)

Base call quality data from DBCLS SRA