Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM4A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-JMJD2A ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A300-861A

Sequenced DNA Library

library_name
GSM831035: H1_JMJD2A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
43258375
Reads aligned (%)
85.3
Duplicates removed (%)
43.1
Number of peaks
25638 (qval < 1E-05)

hg19

Number of total reads
43258375
Reads aligned (%)
84.7
Duplicates removed (%)
44.3
Number of peaks
25466 (qval < 1E-05)

Base call quality data from DBCLS SRA