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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KDM4A
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX116463
GSM831035: H1 JMJD2A
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KDM4A
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
H1 hESCs-JMJD2A ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A300-861A
Sequenced DNA Library
library_name
GSM831035: H1_JMJD2A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
43258375
Reads aligned (%)
85.3
Duplicates removed (%)
43.1
Number of peaks
25638 (qval < 1E-05)
hg19
Number of total reads
43258375
Reads aligned (%)
84.7
Duplicates removed (%)
44.3
Number of peaks
25466 (qval < 1E-05)
Base call quality data from
DBCLS SRA