Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-JARID1C ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A301.034A

Sequenced DNA Library

library_name
GSM831034: H1_JARID1C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
42325251
Reads aligned (%)
37.2
Duplicates removed (%)
34.3
Number of peaks
979 (qval < 1E-05)

hg38

Number of total reads
42325251
Reads aligned (%)
38.2
Duplicates removed (%)
33.0
Number of peaks
763 (qval < 1E-05)

Base call quality data from DBCLS SRA