Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC6

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-HDAC6 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A301.341A

Sequenced DNA Library

library_name
GSM831030: H1_HDAC6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
44619493
Reads aligned (%)
56.1
Duplicates removed (%)
28.6
Number of peaks
1250 (qval < 1E-05)

hg38

Number of total reads
44619493
Reads aligned (%)
57.7
Duplicates removed (%)
27.2
Number of peaks
1116 (qval < 1E-05)

Base call quality data from DBCLS SRA