Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD7

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-CHD7 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A301.223A

Sequenced DNA Library

library_name
GSM831027: H1_CHD7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
44388761
Reads aligned (%)
60.3
Duplicates removed (%)
27.1
Number of peaks
1289 (qval < 1E-05)

hg38

Number of total reads
44388761
Reads aligned (%)
61.7
Duplicates removed (%)
25.9
Number of peaks
1166 (qval < 1E-05)

Base call quality data from DBCLS SRA