SRX116454
GSM831026: H1 CHD1 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-CHD1 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A301-218A

Sequenced DNA Library

library_name
GSM831026: H1_CHD1_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49881120
Reads aligned (%)
82.0
Duplicates removed (%)
29.4
Number of peaks
9256 (qval < 1E-05)

hg19

Number of total reads
49881120
Reads aligned (%)
81.4
Duplicates removed (%)
30.8
Number of peaks
9013 (qval < 1E-05)

Base call quality data from DBCLS SRA