SRX116447
GSM831019: K562 SAP30 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SAP30

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-SAP30 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Active motif,3939731

Sequenced DNA Library

library_name
GSM831019: K562_SAP30_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48325318
Reads aligned (%)
64.0
Duplicates removed (%)
42.6
Number of peaks
7619 (qval < 1E-05)

hg19

Number of total reads
48325318
Reads aligned (%)
63.5
Duplicates removed (%)
44.0
Number of peaks
7520 (qval < 1E-05)

Base call quality data from DBCLS SRA