Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SAP30

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-SAP30 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Active motif,3939731

Sequenced DNA Library

library_name
GSM831018: K562_SAP30_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
43188463
Reads aligned (%)
26.5
Duplicates removed (%)
51.2
Number of peaks
990 (qval < 1E-05)

hg38

Number of total reads
43188463
Reads aligned (%)
27.7
Duplicates removed (%)
49.4
Number of peaks
900 (qval < 1E-05)

Base call quality data from DBCLS SRA