SRX116444
GSM831016: K562 RNAPIIS5P

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-RNAPIIS5P ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Abcam,ab5131

Sequenced DNA Library

library_name
GSM831016: K562_RNAPIIS5P
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44048820
Reads aligned (%)
74.9
Duplicates removed (%)
16.4
Number of peaks
16223 (qval < 1E-05)

hg19

Number of total reads
44048820
Reads aligned (%)
74.4
Duplicates removed (%)
16.5
Number of peaks
16234 (qval < 1E-05)

Base call quality data from DBCLS SRA