SRX116442
GSM831014: K562 RBBP5 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBBP5

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-RBBP5 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A300.109A

Sequenced DNA Library

library_name
GSM831014: K562_RBBP5_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41899943
Reads aligned (%)
88.9
Duplicates removed (%)
13.2
Number of peaks
20710 (qval < 1E-05)

hg19

Number of total reads
41899943
Reads aligned (%)
88.4
Duplicates removed (%)
14.1
Number of peaks
20836 (qval < 1E-05)

Base call quality data from DBCLS SRA