SRX116439
GSM831011: K562 PLU1 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-PLU1 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
A custom antibody

Sequenced DNA Library

library_name
GSM831011: K562_PLU1_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46133835
Reads aligned (%)
73.0
Duplicates removed (%)
34.0
Number of peaks
1200 (qval < 1E-05)

hg19

Number of total reads
46133835
Reads aligned (%)
72.5
Duplicates removed (%)
35.5
Number of peaks
1265 (qval < 1E-05)

Base call quality data from DBCLS SRA