SRX116438
GSM831010: K562 PLU1 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-PLU1 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
A custom antibody

Sequenced DNA Library

library_name
GSM831010: K562_PLU1_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43565238
Reads aligned (%)
52.9
Duplicates removed (%)
18.3
Number of peaks
22324 (qval < 1E-05)

hg19

Number of total reads
43565238
Reads aligned (%)
52.3
Duplicates removed (%)
18.8
Number of peaks
22470 (qval < 1E-05)

Base call quality data from DBCLS SRA