SRX116436
GSM831008: K562 PHF8 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF8

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-PHF8 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A301.772A

Sequenced DNA Library

library_name
GSM831008: K562_PHF8_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41608656
Reads aligned (%)
55.3
Duplicates removed (%)
28.4
Number of peaks
24434 (qval < 1E-05)

hg19

Number of total reads
41608656
Reads aligned (%)
55.0
Duplicates removed (%)
29.1
Number of peaks
24530 (qval < 1E-05)

Base call quality data from DBCLS SRA