SRX116430
GSM831002: K562 LSD1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-LSD1 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A300-215A

Sequenced DNA Library

library_name
GSM831002: K562_LSD1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38937836
Reads aligned (%)
90.5
Duplicates removed (%)
48.1
Number of peaks
8685 (qval < 1E-05)

hg19

Number of total reads
38937836
Reads aligned (%)
89.8
Duplicates removed (%)
49.6
Number of peaks
8653 (qval < 1E-05)

Base call quality data from DBCLS SRA