Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-JARID1C ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A301.034A

Sequenced DNA Library

library_name
GSM831000: K562_JARID1C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
41286920
Reads aligned (%)
20.9
Duplicates removed (%)
32.7
Number of peaks
895 (qval < 1E-05)

hg38

Number of total reads
41286920
Reads aligned (%)
21.5
Duplicates removed (%)
31.6
Number of peaks
830 (qval < 1E-05)

Base call quality data from DBCLS SRA