Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC6

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-HDAC6 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A301.341A

Sequenced DNA Library

library_name
GSM830997: K562_HDAC6_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
41697546
Reads aligned (%)
32.1
Duplicates removed (%)
30.8
Number of peaks
884 (qval < 1E-05)

hg38

Number of total reads
41697546
Reads aligned (%)
33.1
Duplicates removed (%)
29.4
Number of peaks
616 (qval < 1E-05)

Base call quality data from DBCLS SRA