SRX116423
GSM830995: K562 HDAC2 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-HDAC2 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A300.705A

Sequenced DNA Library

library_name
GSM830995: K562_HDAC2_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40535827
Reads aligned (%)
54.2
Duplicates removed (%)
14.8
Number of peaks
719 (qval < 1E-05)

hg19

Number of total reads
40535827
Reads aligned (%)
53.8
Duplicates removed (%)
15.9
Number of peaks
796 (qval < 1E-05)

Base call quality data from DBCLS SRA