SRX116421
GSM830993: K562 HDAC1 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-HDAC1 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Santa cruz,6298X

Sequenced DNA Library

library_name
GSM830993: K562_HDAC1_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45101715
Reads aligned (%)
67.2
Duplicates removed (%)
34.5
Number of peaks
1013 (qval < 1E-05)

hg19

Number of total reads
45101715
Reads aligned (%)
66.6
Duplicates removed (%)
36.2
Number of peaks
1249 (qval < 1E-05)

Base call quality data from DBCLS SRA