SRX116417
GSM830989: K562 CHD1 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-CHD1 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A301-218A

Sequenced DNA Library

library_name
GSM830989: K562_CHD1_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42746787
Reads aligned (%)
85.4
Duplicates removed (%)
14.8
Number of peaks
6873 (qval < 1E-05)

hg19

Number of total reads
42746787
Reads aligned (%)
84.8
Duplicates removed (%)
16.4
Number of peaks
6679 (qval < 1E-05)

Base call quality data from DBCLS SRA