Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat cells expressing a Dox-inducible shRNA against TAL1 without Dox addition
cell line
Jurkat
treatment
None
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq using protocol from Nature Protocols 3 (3): 398-409, 2008. H3K27me3 antibody: Millipore Cat#07-449. Lot#2475696 KAPA ChIP library kit (KAPA Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
94186939
Reads aligned (%)
96.2
Duplicates removed (%)
17.1
Number of peaks
926 (qval < 1E-05)

hg19

Number of total reads
94186939
Reads aligned (%)
95.4
Duplicates removed (%)
18.0
Number of peaks
421 (qval < 1E-05)

Base call quality data from DBCLS SRA