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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Jurkat
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1162906
GSM1859758: Input ChIP-seq TAL1-ctl; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
Jurkat cells expressing a Dox-inducible shRNA against TAL1 without Dox addition
cell line
Jurkat
treatment
None
antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq using protocol from Nature Protocols 3 (3): 398-409, 2008. H3K27me3 antibody: Millipore Cat#07-449. Lot#2475696 KAPA ChIP library kit (KAPA Biosystems)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
94186939
Reads aligned (%)
96.2
Duplicates removed (%)
17.1
Number of peaks
926 (qval < 1E-05)
hg19
Number of total reads
94186939
Reads aligned (%)
95.4
Duplicates removed (%)
18.0
Number of peaks
421 (qval < 1E-05)
Base call quality data from
DBCLS SRA