Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
whole brain
tissue
brain
strain
C57BL/6xCAST
genotype
wild type
age
P21
chip antibody
IgG

Sequenced DNA Library

library_name
GSM862558: input Rad21 BxC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
33843811
Reads aligned (%)
97.9
Duplicates removed (%)
19.1
Number of peaks
556 (qval < 1E-05)

mm9

Number of total reads
33843811
Reads aligned (%)
97.8
Duplicates removed (%)
19.2
Number of peaks
513 (qval < 1E-05)

Base call quality data from DBCLS SRA