Antigen

Antigen Class

TFs and others

Antigen

ESR1

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MCF-7 breast cancer cell line

cell line

MCF-7

cell type

Pleural effusion from an adenocarcinoma of the breast

treatment

untreated

time

30 minutes

replicate

replicate 1

antibody

ER cocktail: Ab-10 Thermo Scientific Lab Vision, HC-20 sc-543 Santa Cruz

growth proptocol

For maintenance cells were cultured in DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and GR/DNA, ER/DNA, of FoxA1/DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

51673676

Reads aligned (%)

95.8

Duplicates removed (%)

12.4

Number of peaks

7684 (qval < 1E-05)

hg38

Number of total reads

51673676

Reads aligned (%)

96.6

Duplicates removed (%)

11.1

Number of peaks

7777 (qval < 1E-05)