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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Sperm
ATCC
MeSH
RIKEN BRC
SRX1159960
GSM1857644: Input LFD5; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Gonad
Cell type
Sperm
NA
NA
Attributes by original data submitter
Sample
source_name
Low fat diet
cell types
spermatozoa
gender
male
strain
C57BL/6J
chip antibody
Input control
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extraction and specific precipitation using anti -H3 or anti -H3K4me1 antibodies, Input served as control After application of the Illumina ChIP-seq library preparation kit the sample was subjected to Solexa sequencing (Illumina)
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
26504237
Reads aligned (%)
93.7
Duplicates removed (%)
36.9
Number of peaks
886 (qval < 1E-05)
mm9
Number of total reads
26504237
Reads aligned (%)
93.0
Duplicates removed (%)
36.8
Number of peaks
990 (qval < 1E-05)
Base call quality data from
DBCLS SRA